Endonuclease PvuII (1PVI) DNA - GATTACAGATTACA
CAP - Catabolite gene Activating Protein (1BER)
DNA - GATTACAGATTACAGATTACA Endonuclease PvuII bound to palindromic DNA recognition site CAGCTG (1PVI) DNA - GATTACAGATTACAGATTACA TBP - TATA box Binding Protein (1C9B)
CAP - Catabolite gene Activating Protein (1BER)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
TBP - TATA box Binding Protein (1C9B)
 

YASARA AutoSMILES Server

The AutoSMILES server performs the tasks summarized on the figure below, returning the submitted structure with assigned hydrogens, bond orders and charges. Please note the following points:

  • Results will be placed in a public download area, do not submit confidential data.
  • You can also use AutoSMILES directly on your own computer, it is part of YASARA Dynamics and YASARA Structure.
  • This server does not handle transition states, for these you need a local installation of YASARA Dynamics or YASARA Structure.


AutoSMILES Server

Either PDB ID..
..or any other PDB file:
ForceField (charges):
pH (protonation states):