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The YAMBER force field
YAMBER
is a second generation self-parametrizing force field. It has been
derived from the AMBER force field (hence the name Yet Another Model
Building and Energy Refinement force field) by an optimization
procedure first described for the NOVA force field.
This time, the optimization targets were however complete unit cells of
high resolution X-ray structures. YAMBER is the most accurate protein MDforce field YASARA has to offer.
A YASARA movie about YAMBER is also available for download.
A paper describing YAMBER was published in:
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Making
optimal use of empirical energy functions: Force-field parameterization
in crystal space.
Krieger E, Darden T, Nabuurs SB, Finkelstein A, Vriend G.
Proteins. (2004) 57:678-683
If you enter your email address
below, you will receive the YAMBER parameters and a reprint of the
YAMBER paper. The successor of
YAMBER (the YASARA force field) has been released in 2008 as part
of YASARA Structure.
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YAMBER force field parameter request |
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